ERNEST: a toolbox for chemical reaction network theory

CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks

UNLABELLED Chemical reaction network theory is widely used in modeling and analyzing complex biochemical systems such as metabolic networks and cell signalling pathways. Being able to produce all the biologically and chemically important qualitative dynamical features, chemical reaction networks (CRNs) have attracted significant attention in the systems biology community. It is well-known that ...

CRNreals: a toolbox for distinguishability and identifiability analysis of chemical reaction networks USER GUIDE

Electromembrane Processes, a Toolbox for Advanced Separations

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology

We present a Systems Biology Toolbox for the widely used general purpose mathematical software MATLAB. The toolbox offers systems biologists an open and extensible environment, in which to explore ideas, prototype and share new algorithms, and build applications for the analysis and simulation of biological and biochemical systems. Additionally it is well suited for educational purposes. The to...

Integrating software packages for the analysis of biological pathway networks

Interactions at the cellular level are essential for maintaining the fundamental life processes in biological systems. The relationships that are established due to the biochemical reactions occurring within the cells often give rise to extremely complex network structures that may be conveniently represented by bipartite graphs; such networks are often known as biological pathway graphs (BPGs)...